Chapter 17 Workflow
In this chapter, we introduce some tips on working with individual R Markdown documents as well as running your R Markdown projects. You may also check out Chapter 30 of the book R for Data Science (Wickham and Grolemund 2016), which briefly introduces some tips on using analysis notebooks (including R Markdown documents). Nicholas Tierney also discusses the workflow in the book R Markdown for Scientists.
Wickham, Hadley, and Garrett Grolemund. 2016. R for Data Science. O’Reilly Media, Inc.