References

Aria, Massimo, and Corrado Cuccurullo. 2017. “Bibliometrix: An r-Tool for Comprehensive Science Mapping Analysis.” Journal of Informetrics 11 (4): 959–75.
Auguie, Baptiste. 2017. gridExtra: Miscellaneous Functions for Grid Graphics. https://CRAN.R-project.org/package=gridExtra.
Bodenhofer, Ulrich, Enrico Bonatesta, Christoph Horejs-Kainrath, and Sepp Hochreiter. 2015. “Msa: An r Package for Multiple Sequence Alignment.” Bioinformatics 31 (24): 3997–99. https://doi.org/10.1093/bioinformatics/btv494.
Csárdi, Gábor, Tamás Nepusz, Kirill Müller, Szabolcs Horvát, Vincent Traag, Fabio Zanini, and Daniel Noom. 2023. igraph for R: R interface of the igraph library for graph theory and network analysis.” Zenodo. https://doi.org/10.5281/zenodo.8240644.
Cui, Boxuan. 2020. DataExplorer: Automate Data Exploration and Treatment. https://CRAN.R-project.org/package=DataExplorer.
Dayanand Ubrangala, Kiran R, Ravi Prasad Kondapalli, and Sayan Putatunda. 2022. SmartEDA: Summarize and Explore the Data. https://CRAN.R-project.org/package=SmartEDA.
de Mendiburu, Felipe. 2023. Agricolae: Statistical Procedures for Agricultural Research. https://CRAN.R-project.org/package=agricolae.
Fox, John, and Sanford Weisberg. 2019. An R Companion to Applied Regression. Third. Thousand Oaks CA: Sage. https://socialsciences.mcmaster.ca/jfox/Books/Companion/.
Gohel, David. 2023. Using the Flextable r Package.
Gohel, David, and Panagiotis Skintzos. 2023. Flextable: Functions for Tabular Reporting. https://CRAN.R-project.org/package=flextable.
Gross, Juergen, and Uwe Ligges. 2015. Nortest: Tests for Normality. https://CRAN.R-project.org/package=nortest.
Higuera, Gardiner, Clara, and Krzysztof Cios. 2015. Mice Protein Expression.” UCI Machine Learning Repository.
Huber, Wolfgang, Vincent J Carey, Robert Gentleman, Simon Anders, Marc Carlson, Benilton S Carvalho, Hector Corrada Bravo, et al. 2015. “Orchestrating High-Throughput Genomic Analysis with Bioconductor.” Nature Methods 12 (2): 115–21.
Iannone, Richard. 2016. DiagrammeRsvg: Export DiagrammeR Graphviz Graphs as SVG. https://CRAN.R-project.org/package=DiagrammeRsvg.
———. 2023. DiagrammeR: Graph Network Visualization. https://CRAN.R-project.org/package=DiagrammeR.
Irizarry, Rafael A. 2019. Introduction to Data Science: Data Analysis and Prediction Algorithms with r. CRC Press.
Jockers, Matthew L. 2015. Syuzhet: Extract Sentiment and Plot Arcs from Text. https://github.com/mjockers/syuzhet.
Kassambara, Alboukadel. 2023. Ggpubr: Ggplot2 Based Publication Ready Plots. https://CRAN.R-project.org/package=ggpubr.
Komsta, Lukasz, and Frederick Novomestky. 2022. Moments: Moments, Cumulants, Skewness, Kurtosis and Related Tests. https://CRAN.R-project.org/package=moments.
Lang, Dawei, and Guan-tin Chien. 2018. Wordcloud2: Create Word Cloud by ’Htmlwidget’. https://CRAN.R-project.org/package=wordcloud2.
Makowski, Dominique, Daniel Ludecke, Indrajeet Patil, Remi Theriault, Mattan S. Ben-Shachar, and Brenton M. Wiernik. 2023. “Automated Results Reporting as a Practical Tool to Improve Reproducibility and Methodological Best Practices Adoption.” CRAN. https://easystats.github.io/report/.
Ogle, Derek H., Jason C. Doll, A. Powell Wheeler, and Alexis Dinno. 2023. FSA: Simple Fisheries Stock Assessment Methods. https://CRAN.R-project.org/package=FSA.
Ooms, Jeroen. 2022. Rsvg: Render SVG Images into PDF, PNG, (Encapsulated) PostScript, or Bitmap Arrays. https://CRAN.R-project.org/package=rsvg.
———. 2023. Pdftools: Text Extraction, Rendering and Converting of PDF Documents. https://CRAN.R-project.org/package=pdftools.
Patil, Indrajeet. 2021. Visualizations with statistical details: The ggstatsplot approach.” Journal of Open Source Software 6 (61): 3167. https://doi.org/10.21105/joss.03167.
Peterson, Brian G., and Peter Carl. 2020. PerformanceAnalytics: Econometric Tools for Performance and Risk Analysis. https://CRAN.R-project.org/package=PerformanceAnalytics.
R Core Team. 2023. R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing. https://www.R-project.org/.
Rennie, Nicola. 2023. Ggflowchart: Flowcharts with Ggplot2. https://CRAN.R-project.org/package=ggflowchart.
Ru, Yuanbin, Matt Mulvahill, Spencer Mahaffey, and Katerina Kechris. n.d. multiMiR: Integration of Multiple microRNA-Target Databases with Their Disease and Drug Associations. https://github.com/KechrisLab/multiMiR.
Ryu, Choonghyun. 2023. dlookr: Tools for Data Diagnosis, Exploration, Transformation. https://CRAN.R-project.org/package=dlookr.
Schauberger, Philipp, and Alexander Walker. 2023. Openxlsx: Read, Write and Edit Xlsx Files. https://CRAN.R-project.org/package=openxlsx.
Schloerke, Barret, Di Cook, Joseph Larmarange, Francois Briatte, Moritz Marbach, Edwin Thoen, Amos Elberg, and Jason Crowley. 2021. GGally: Extension to Ggplot2. https://CRAN.R-project.org/package=GGally.
Sinnwell, Jason, and Terry Therneau. 2022. Kinship2: Pedigree Functions. https://CRAN.R-project.org/package=kinship2.
Torgo, Luı́s. 2011. “Introdução à Programação Em r.”
Trees, Reconstructing Phylogenetic. 1987. “The Neighbor-Joining Method: A New Method For.” Mol. Biol. Evol 4 (4): 406–25.
Warnes, Gregory, with contributions from Gregor Gorjanc, Friedrich Leisch, and Michael Man. 2021. Genetics: Population Genetics. https://CRAN.R-project.org/package=genetics.
Wickham, Hadley. 2016. Ggplot2: Elegant Graphics for Data Analysis. Springer-Verlag New York. https://ggplot2.tidyverse.org.
Wickham, Hadley, Mara Averick, Jennifer Bryan, Winston Chang, Lucy DAgostino McGowan, Romain Francois, Garrett Grolemund, et al. 2019. “Welcome to the Tidyverse.” Journal of Open Source Software 4 (43): 1686. https://doi.org/10.21105/joss.01686.
Wickham, Hadley, Mine Çetinkaya-Rundel, and Garrett Grolemund. 2023. R for Data Science. " OReilly Media, Inc.".
Xie, Yihui, Joseph J Allaire, and Garrett Grolemund. 2023. R Markdown: The Definitive Guide. CRC Press.
Yan, Linlin. 2023. Ggvenn: Draw Venn Diagram by Ggplot2. https://CRAN.R-project.org/package=ggvenn.
Zhou, Lang, Tingze Feng, Shuangbin Xu, Fangluan Gao, Tommy T Lam, Qianwen Wang, Tianzhi Wu, et al. 2022. “Ggmsa: A Visual Exploration Tool for Multiple Sequence Alignment and Associated Data.” BRIEFINGS IN BIOINFORMATICS 23 (June). https://doi.org/10.1093/bib/bbac222.