Landscape Genetic Data Analysis with R
Getting Started
1 Introduction
- 1.1 How to use this Book
- 1.2 List of R Packages by Vignette
2 Review of R Skills
3 GitHub for Group Projects
Basic Topics
4 Week 1: Importing Genetic Data
5 Week 2: Spatial Data
6 Week 3: Genetic Diversity
7 Week 4: Metapopulations
8 Week 5: Spatial Statistics
9 Week 6: Quantitative Genetics
10 Week 7: Spatial Linear Models
11 Week 8: Simulation Experiments
Advanced Topics
12 Week 9: Population Structure
- 12.1 Worked Example
13 Week 10: Landscape Resistance
- 13.1 Worked Example
- 13.2 Bonus: ‘radish’ tutorial
14 Week 11: Detecting Adaptation
- 14.1 Worked Example
15 Week 12: Model Selection
- 15.1 Worked Example
16 Week 13: Gravity Models
- 16.1 Worked Example
17 Week 14: Contemporary Gene Flow
- 17.1 Worked Example
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Landscape Genetic Data Analysis with R

2 Review of R Skills

This part contains two optional vignettes that will help you brush up your basic R programming skills and get a head-start on R graphics.

Basic R Programming
R Graphics
Further R Resources