1.2 List of R Packages by Vignette

Scroll through the list to find which R packages are used in which vignette (i.e., weekly worked example or bonus vignette). This may be helpful for finding relevant materials if you are interested in a specific type of analysis.

Notes:

‘B’ and ‘G’ refer to the Review of R Skills section (B = Basic R, G = Graphics)
Lowercase letters refer to bonus vignettes. E.g., 2a is the (first) bonus vignette of Week 2.

	B	G	1	2	2a	3	4	5	6	7	8	8a	9	10	10a	11	12	13	14
ade4							X	X
adegenet			X			X		X
car									X	X
corMLPE											X						X
cowplot							X												X
data.table											X	X
dplyr				X	X			X	X	X								X	X
e1071													X
EcoGenetics								X	X
effsize							X
fields													X
foreach												X
gdistance														X
GeNetIt																		X
ggeffects									X
ggplot2		X					X			X	X				X				X
gridExtra										X
gstudio	X		X					X			X								X
here			X								X	X						X
hierfstat								X
igraph																		X
knitr												X			X
landscapemetrics				X
lattice									X
LEA													X
lfmm																X
mapplots													X
MASS								X
microbenchmark												X
mmod								X			X
MuMIn									X	X									X
nlme										X	X						X
pegas						X
PopGenReport						X		X			X
poppr						X	X
predictmeans									X	X
profvis												X
purrr													X						X
pwr							X
QstFstComp									X
qvalue																X
radish															X
raster											X				X
RColorBrewer		X		X									X
readr												X
rio												X
secr											X
sf				X	X		X			X				X	X			X	X
sfnetworks																		X
sp															X
spatialEco																X		X
spatialreg										X
spdep								X		X				X				X
spmoran										X
terra				X											X			X
tmap				X	X		X			X								X	X
vcfR			X
vegan								X								X			X