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Disentangling the contribution of climate, deforestation, and control efforts on malaria epidemiology in the Peruvian Amazon rainforest
1
Prerequisites
2
Principal figures (Descriptive Analysis)
2.1
Packages, data, and helpers
2.2
Figure 1 [COMPLETE] - Study Area
2.2.1
Figure 1A
2.3
Figure 2 [COMPLETE] Seasonal and inter-annual trends of P.vivax and P.Falciparum
3
Principal figures (Figure Models)
3.1
Packages, data, and helpers
3.2
Figure 3 [COMPLETE] Fixed effects of baseline, linear and nonlinear models with seasonal-spatial and spatial effects for A) P.vivax and B) P Falciparum malaria
3.3
Figure 4 [COMPLETE] Spatial heterogeneity of covariates effects in terms of mean absolute error (MAE)
3.4
Figure 5 [COMPLETE] A)Scatter plot and B)map of time to cumulative deforestation threshold relative to P.vivax and P.falciparum
4
Supplementary Figures (Model)
4.1
Packages, data, and helpers
4.2
Supplementary Figure 7 [COMPLETE] Relative risk nonlinear effects of deforestation, prcp,Tmax,month and year for A)P.vivax and B)Falciparum
4.3
Supplementary Figure 8 [COMPLETE]Contributions of spatial random effects to P.vivax and P.falciparum risk
5
New Fidings
5.1
Finding the best model
5.1.1
Falciparum
5.1.2
Vivax
5.2
Final Models
5.2.1
Falciparum
5.2.2
Vivax
5.3
Selection Model
5.4
Fixed Effects
5.4.1
Nonlinear model
5.4.2
Linear model
5.5
Figure 4 Spatial heterogeneity of covariates effects in terms of mean absolute error
5.6
MAE: Dumbbell plot
5.7
Dumbbell plot and Spatial heterogeneity of covariates effects in terms of mean absolute error
5.8
Supplementary Figure 7: Nonlinear effects
5.8.1
Figure 7.1
5.8.2
Figure 7.2
5.9
Combine plot
5.9.1
Combine plot 1
5.9.2
Combine plot 2
5.10
Supplementary Figure 8: Contributions of spatial random effects to P.vivax and P.falciparum risk
6
New Findings: Tables
6.1
Model Performance Falciparum
6.2
Model Performance Vivax
6.3
MAE
6.3.1
Vivax: MAE per district
6.3.2
Falciparum: MAE per district
7
Extra table
7.1
Falciparum
7.2
Vivax
8
References
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Disentangling the contribution of climate,deforestation,and control efforts on malaria epidemiology in the peruvian amazon rainforest
Chapter 8
References
Using INLA in the precence of missing covariates
FAQs from INLA