• Disentangling the contribution of climate, deforestation, and control efforts on malaria epidemiology in the Peruvian Amazon rainforest
  • 1 Prerequisites
  • 2 Principal figures (Descriptive Analysis)
    • 2.1 Packages, data, and helpers
    • 2.2 Figure 1 [COMPLETE] - Study Area
      • 2.2.1 Figure 1A
    • 2.3 Figure 2 [COMPLETE] Seasonal and inter-annual trends of P.vivax and P.Falciparum
  • 3 Principal figures (Figure Models)
    • 3.1 Packages, data, and helpers
    • 3.2 Figure 3 [COMPLETE] Fixed effects of baseline, linear and nonlinear models with seasonal-spatial and spatial effects for A) P.vivax and B) P Falciparum malaria
    • 3.3 Figure 4 [COMPLETE] Spatial heterogeneity of covariates effects in terms of mean absolute error (MAE)
    • 3.4 Figure 5 [COMPLETE] A)Scatter plot and B)map of time to cumulative deforestation threshold relative to P.vivax and P.falciparum
  • 4 Supplementary Figures (Model)
    • 4.1 Packages, data, and helpers
    • 4.2 Supplementary Figure 7 [COMPLETE] Relative risk nonlinear effects of deforestation, prcp,Tmax,month and year for A)P.vivax and B)Falciparum
    • 4.3 Supplementary Figure 8 [COMPLETE]Contributions of spatial random effects to P.vivax and P.falciparum risk
  • 5 New Fidings
    • 5.1 Finding the best model
      • 5.1.1 Falciparum
      • 5.1.2 Vivax
    • 5.2 Final Models
      • 5.2.1 Falciparum
      • 5.2.2 Vivax
    • 5.3 Selection Model
    • 5.4 Fixed Effects
      • 5.4.1 Nonlinear model
      • 5.4.2 Linear model
    • 5.5 Figure 4 Spatial heterogeneity of covariates effects in terms of mean absolute error
    • 5.6 MAE: Dumbbell plot
    • 5.7 Dumbbell plot and Spatial heterogeneity of covariates effects in terms of mean absolute error
    • 5.8 Supplementary Figure 7: Nonlinear effects
      • 5.8.1 Figure 7.1
      • 5.8.2 Figure 7.2
    • 5.9 Combine plot
      • 5.9.1 Combine plot 1
      • 5.9.2 Combine plot 2
    • 5.10 Supplementary Figure 8: Contributions of spatial random effects to P.vivax and P.falciparum risk
  • 6 New Findings: Tables
    • 6.1 Model Performance Falciparum
    • 6.2 Model Performance Vivax
    • 6.3 MAE
      • 6.3.1 Vivax: MAE per district
      • 6.3.2 Falciparum: MAE per district
  • 7 Extra table
    • 7.1 Falciparum
    • 7.2 Vivax
  • 8 References
  • Published with bookdown

Disentangling the contribution of climate,deforestation,and control efforts on malaria epidemiology in the peruvian amazon rainforest

Chapter 8 References

  1. Using INLA in the precence of missing covariates

  2. FAQs from INLA