C Available data sets
All the data sets described here can be downloaded from https://github.com/taragonmd/data.
Latina Mothers and their Newborn
Variable | Description | Possible values |
---|---|---|
age |
Maternal age | In years (self-reported) |
parity |
Parity | Count of previous live births |
gest |
Gestation | Reported in days |
sex |
Gender | Male = 1, Female = 2 |
bwt |
Birth weight | Grams |
cigs |
Smoking | Number of cigarettes per day (self-reported) |
ht |
Maternal height | Measured in centimeters |
wt |
Maternal weight | Pre-pregnancy weight (self-reported) |
r1 |
Rate of weight gain (1st trimester) | Kilograms per day (estimated) |
r2 |
Rate of weight gain (2nd trimester) | Kilograms per day (estimated) |
r2 |
Rate of weight gain (3rd trimester) | Kilograms per day (estimated) |
From 1980 to 1990 data was collected on 427 Latino mothers that gave birth at the University of California, San Francisco cite[Selvin2001_9780195144895, Abrams1995_7617345]. Data was collected on the characteristics of the mothers and their newborn infants (C.1). Mothers were weighed at each prenatal visit. Rate of weight gain during each trimester was based on a linear regression interpolation.
Oswego County (outbreak)
Variable | Possible values |
---|---|
id |
Subject identificaton number |
age |
Age in years |
sex |
Sex: F = Female, M = Male |
meal.time |
Meal time on April 18th |
ill |
Developed illness: Y = Yes N = No |
onset.date |
Onset date: “4/18” = April 18th, “4/19” = April 19th |
onset.time |
Onset time: HH:MM AM/PM |
baked.ham (BH) |
Consumed item: Y = Yes; N = No |
spinach (Sp) |
Consumed item: Y = Yes; N = No |
mashed.potato (MP) |
Consumed item: Y = Yes; N = No |
cabbage.salad (CS) |
Consumed item: Y = Yes; N = No |
jello (Je) |
Consumed item: Y = Yes; N = No |
rolls (Ro) |
Consumed item: Y = Yes; N = No |
brown.bread (BB) |
Consumed item: Y = Yes; N = No |
milk (Mi) |
Consumed item: Y = Yes; N = No |
coffee (Co) |
Consumed item: Y = Yes; N = No |
water (Wa) |
Consumed item: Y = Yes; N = No |
cakes (Ca) |
Consumed item: Y = Yes; N = No |
vanilla.ice.cream (VI) |
Consumed item: Y = Yes; N = No |
chocolate.ice.cream (CI) |
Consumed item: Y = Yes; N = No |
fruit.salad (FS) |
Consumed item: Y = Yes; N = No |
On April 19, 1940, the local health officer in the village of Lycoming, Oswego County, New York, reported the occurrence of an outbreak of acute gastrointestinal illness to the District Health Officer in Syracuse. Dr. A. M. Rubin, epidemiologist-in-training, was assigned to conduct an investigation.
When Dr. Rubin arrived in the field, he learned from the health officer that all persons known to be ill had attended a church supper held on the previous evening, April 18. Family members who did not attend the church supper did not become ill. Accordingly, Dr. Rubin focused the investigation on the supper. He completed Interviews with 75 of the 80 persons known to have attended, collecting information about the occurrence and time of onset of symptoms, and foods consumed. Of the 75 persons interviewed, 46 persons reported gastrointestinal illness.
The onset of illness in all cases was acute, characterized chiefly by nausea, vomiting, diarrhea, and abdominal pain. None of the ill persons reported having an elevated temperature; all recovered within 24 to 30 hours. Approximately 20 physicians. No fecal specimens were obtained for bacteriologic examination.
The supper was held in the basement of the village church. Foods were contributed by numerous members of the congregation. The supper began at 6:00 p.m. and continued until 11:00 p.m. Food was spread out on table and consumed over a period of several hours. Data regarding onset of illness and food eaten or water drunk by each of the 75 persons interviewed are provided in the attached line listing (Oswego dataset). The approximate time of eating supper was collected for only about half the persons who had gastrointestinal illness.
The data dictionary is provided in C.2.
Western Collaborative Group Study (cohort)
Variable | Variable name | Variable type | Possible values |
---|---|---|---|
id |
Subject ID | Integer | 2001–22101 |
age0 |
Age | Continuous | 39–59 years |
height0 |
Height | Continuous | 60–78 in |
weight0 |
Weight | Continuous | 78–320 lb |
sbp0 |
Systolic blood pressure | Continuous | 98–230 mm Hg |
dbp0 |
Diastolic blood pressure | Continuous | 58–150 mm Hg |
chol0 |
Cholesterol | Continuous | 103–645 mg/100 ml |
behpat0 |
Behavior pattern | Categorical | 1 = Type A1; 2 = Type A2; 3 = Type B1; 4 = Type B2 |
ncigs0 |
Smoking | Integer | Cigarettes/day |
dibpat0 |
Behavior pattern | Categorical | 0 = Type B; 1 = Type A |
chd69 |
Coronary heart disease event | Categorical | 0 = None; 1 = Yes |
typechd |
Coronary heart disease event | Categorical | 0 = CHD event; 1 = Symptomatic MI; 2 = Silent MI; 3 = Classical angina |
time169 |
Observation (follow up) time | Continuous | 18–3430 days |
arcus0 | Corneal arcus | Categorical | 0 = None; 1 = Yes |
The Western Collaborative Group Study (WCGS), a prospective cohort studye, recruited middle-aged men (ages 39 to 59) who were employees of 10 California companies and collected data on 3154 individuals during the years 1960–1961. These subjects were primarily selected to study the relationship between behavior pattern and the risk of coronary hearth disease (CHD). A number of other risk factors were also measured to provide the best possible assessment of the CHD risk associated with behavior type. Additional variables collected include age, height, weight, systolic blood pressure, diastolic blood pressure, cholesterol, smoking, and corneal arcus. The median follow up time was 8.05 years.
The data dictionary is provided in C.3.
Evans County (cohort)
Variable | Variable name | Variable type | Possible values |
---|---|---|---|
id | Subject identifier | Integer | |
chd | Coronary heart disease | Categorical-nominal | 0 = no; 1 = yes |
cat | Catecholamine level | Categorical-nominal | 0 = normal; 1 = high |
age | Age | Continuous | years |
chl | Cholesterol | Continuous | \(> 0\) |
smk | Smoking status | Categorical-nominal | 0 = never smoked; 1 = ever smoked |
ecg | Electrocardiogram | Categorical-nominal | 0 = no abnormality; 1 = abnormality |
dbp | Diastolic blood pressure | Continuous | mm Hg |
sbp | Systolic blood pressure | Continuous | mm Hg |
hpt | High blood pressure | Categorical-nominal | 0 = no; 1 = yes (dbp\(\ge95\) or sbp\(\ge160\)) |
ch | cat \(\times\) hpt | Categorical | product term |
cc | cat \(\times\) chl | Continuous | product term |
The Evans County data set is used to demonstrate a standard logistic regression (unconditional) cite[kleinbaum2002]. The data are from a cohort study in which 609 white males were followed for 7 years, with coronary heart disease as the outcome of interest.
The data dictionary is provided in C.4.
Myocardial infarction case-control study
Variable | Variable name | Variable type | Possible values |
---|---|---|---|
match | Matching strata | Integer | 1–39 |
person | Subject identifier | Integer | 1–117 |
mi | Myocardial infarction | Categorical-nominal | 0 = No; 1 = Yes |
smk | Smoking status | Categorical-nominal | 0 = Not current smoker; 1 = Current smoker |
sbp | Systolic blood pressure | Categorical-ordinal | 120, 140, or 160 |
ecg | Electrocardiogram | Categorical-nominal | 0 = No abnormality; 1 = abnormality |
The myocardial infarction (MI) data set cite[kleinbaum2002] is used to demonstrate conditional logistic regression. The study is a case-control study that involves 117 subjects in 39 matched strata (matched by age, race, and sex). Each stratum contains three subjects, one of whom is a case diagnosed with myocardial infarction and the other two are matched controls.
The data dictionary is provided in C.5.
AIDS surveillance cases
Download aids.txt
.
Hepatitis B surveillance cases
Download hepb.txt
.
Measles surveillance cases
Download measles.txt
.
West Nile virus surveillance cases, California 2004
Download ./wnv/wnv2004fin.txt
.
Download ./wnv/wnv2004raw.txt
.
University Group Diabetes Program
Download ugdp.txt
Novel influenza A (H1N1) pandemic
United States reported cases and deaths as of July 23, 2009
Download h1n1panflu23jul09usa.txt
.