Other information

See the welly-trevally git repository and the trevallyApp git repository for the code and documentation associated with this thesis and the accompnying app.

Key R packages used within R version 3.6.1 to create this thesis and the accompanying app: bookdown (Xie 2018a), dplyr (Wickham et al. 2019), ggplot2 (Wickham et al. 2018), kableExtra (Zhu 2019), knitr (Xie 2018b), leaflet (Cheng, Karambelkar, and Xie 2018), leafletextras (Bhaska and Barret 2018), mapview (Appelhans et al. 2019), networkD3 (Allaire et al. 2017), phylocanvas (Charlop-Powers 2017), plotly (Sievert et al. 2018), rmarkdown (Allaire et al. 2018), sf (Pebesma 2018), sp (Pebesma and Bivand 2018) and tinytex (Xie 2019).

References

Allaire, J., C. Gandrud, K. Russell, and C. Yetman. 2017. NetworkD3: D3 JavaScript network graphs from R. https://CRAN.R-project.org/package=networkD3.

Allaire, J., Y. Xie, J. McPherson, J. Luraschi, K. Ushey, A. Atkins, H. Wickham, J. Cheng, W. Chang, and R. Iannone. 2018. Rmarkdown: Dynamic Documents for R. https://CRAN.R-project.org/package=rmarkdown.

Appelhans, T., F. Detsch, C. Reudenbach, and S. Woellauer. 2019. Mapview: Interactive Viewing of Spatial Data in R. https://CRAN.R-project.org/package=mapview.

Bhaska, R., and S. Barret. 2018. Leaflet.extras: Extra Functionality for ’Leaflet’ Package. https://CRAN.R-project.org/package=leaflet.extras.

Charlop-Powers, Z. 2017. Phylocanvas: Interactive Phylogenetic Trees Using the ’Phylocanvas’ JavaScript Library. https://CRAN.R-project.org/package=phylocanvas.

Cheng, J., B. Karambelkar, and Y. Xie. 2018. Leaflet: Create Interactive Web Maps with the JavaScript ’Leaflet’ Library. https://CRAN.R-project.org/package=leaflet.

Pebesma, E. 2018. Sf: Simple Features for R. https://CRAN.R-project.org/package=sf.

Pebesma, E., and R. Bivand. 2018. Sp: Classes and Methods for Spatial Data. https://CRAN.R-project.org/package=sp.

Sievert, C., C. Parmer, S. Hocking T. Chamberlain, K. Ram, M. Corvellec, and P. Despouy. 2018. Plotly: Create Interactive Web Graphics via ’Plotly.js’. https://CRAN.R-project.org/package=plotly.

Wickham, H., W. Chang, L. Henry, T. Pedersen, K. Takahashi, C. Wilke, and K. Woo. 2018. Ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics. https://CRAN.R-project.org/package=ggplot2.

Wickham, H., R. François, L. Henry, and K. Müller. 2019. Dplyr: A Grammar of Data Manipulation. https://CRAN.R-project.org/package=dplyr.

Xie, Y. 2018a. Bookdown: Authoring Books and Technical Documents with R Markdown. https://CRAN.R-project.org/package=bookdown.

Xie, Y. 2018b. Knitr: A General-Purpose Package for Dynamic Report Generation in R. https://CRAN.R-project.org/package=knitr.

Xie, Y. 2019. Tinytex: Helper Functions to Install and Maintain ’Tex Live’, and Compile ’Latex’ Documents. https://CRAN.R-project.org/package=tinytex.

Zhu, H. 2019. KableExtra: Construct Complex Table with ’Kable’ and Pipe Syntax. https://CRAN.R-project.org/package=kableExtra.