8 Descriptive Statistics

The best way to understand how participants in your study have responded to various questions or experimental treatments is to use descriptive statistics. As the name indicates, their main purpose is to ‘describe.’ Most of the time, we want to describe the composition of our sample and how the majority (or minority) of participants performed.

In contrast, we use inferential statistics to make predictions. In Social Sciences, we are often interested in predicting how people will behave in certain situations and scenarios. We aim to develop models that help us navigate the complexity of social interactions that we all engage in but might not fully understand. We cover inferential statistics in later chapters of this book.

In short, descriptive statistics are an essential component to understand your data. To some extent, one could argue that we were already describing our data when we performed various data wrangling tasks (see Chapter 7). The following chapters focus on essential descriptive statistics, i.e. those you likely want to investigate in 99.9 out of 100 research projects.

This book takes a ‘visualised’ approach to data analysis. Therefore, each section will entail data visualisations and statistical computing. A key learning outcome of this chapter is to plot your data using the package ggplot2 and present your data’s characteristics in different ways. Each chapter will ask questions about our dataset that we aim to answer visually and computationally. However, first, we need to understand how to create plots in R.

8.1 Plotting in R with ggplot2

Plotting can appear intimidating at first but is very easy and quick once you understand the basics. The ggplot2 package is a very popular package to generate plots in R, and many other packages are built upon it. This makes it a very flexible tool to create almost any data visualisation you could imagine. If you want to see what is possible with ggplot2, you might want to consider looking at #tidytuesday on Twitter, where novices and veterans share their data visualisations every week.

To generate any plot, we need to define three components at least:

• a dataset,

• variables we want to plot, and

• a function to indicate how we want to plot them, e.g. as lines, bars, points, etc.

Admittedly, this is a harsh oversimplification, but it will serve as a helpful guide to get us started. The function ggplot() is the one responsible for creating any type of data visualisation. The generic structure of a ggplot() looks like this:

ggplot(data, aes(x = variable_01, y = variable_02))

In other words, we first need to provide the dataset data, and then the aesthetics (aes()). Think of aes() as the place where we define our variables (i.e. x and y). For example, we might be interested to know which movie genre is the most popular among the top 250 IMDb movies. The dataset imdb_top_250 from the r4np package allows us to find an answer to this question. Therefore we define the components of the plot as follows:

• our data is imdb_top_250, and

• our variable of interest is genre_01.

ggplot(imdb_top_250, aes(x = genre_01))

Running this line of code will produce an empty plot. We only get labels for our x-axis since we defined it already. However, we have yet to tell ggplot() how we want to represent the data on this canvas. Your choice for how you want to plot your data is usually informed by the type of data you use and the statistics you want to represent. For example, plotting the mean of a factor is not meaningful, e.g. computing the mean of movie genres. On the other hand, we can count how often specific genres appear in our dataset. One way of representing a factor’s count (or frequency) is to use a bar plot. To add an element to ggplot(), i.e. bars, we use + and append the function geom_bar(), which draws bars. The + operator works similar to %>% and allows to chain multiple functions one after the other as part of a ggplot().

ggplot(imdb_top_250, aes(x = genre_01)) +
geom_bar()

With only two lines of coding, we created a great looking plot. We can see that Drama is by far the most popular genre, followed by Action and Crime. Thus, we successfully found an answer to our question. Still, there are more improvements necessary to use it in a publication.

We can use + to add other elements to our plot, such as a title and proper axes labels. Here are some common functions to further customise our plot:

ggplot(imdb_top_250, aes(x = genre_01)) +
geom_bar() +
ggtitle("Most popular movie genres") +  # Add a title
xlab("movie genre") +                   # Rename x-axis
ylab("frequency")                       # Rename y-axis

When working with factors, the category names can be rather long. In this plot, we have lots of categories, and the labels Adventure, Animation, and Biography are a bit too close to each other for my taste. This might be an excellent opportunity to use coord_flip(), which rotates the entire plot by 90 degrees, i.e. turning the x-axis into the y-axis and vice versa. This makes the labels much easier to read.

ggplot(imdb_top_250, aes(x = genre_01)) +
geom_bar() +
ggtitle("Most popular movie genres") +
xlab("movie genre") +
ylab("frequency") +
coord_flip()

Our plot is almost perfect, but we should take one more step to make reading and understanding this plot even easier. At the moment, the bars are ordered alphabetically by movie genre. Unfortunately, this is hardly ever a useful way to order your data. Instead, we might want to sort the data by frequency, showing the most popular genre at the top. To achieve this, we could either sort the movies by hand (see Chapter 7.5.2) or slightly amend what we have coded so far.

The problem you encounter when rearranging a geom_bar() with only one variable is that we do not have an explicit value to indicate how we want to sort the bars. Our current code is based on the fact that ggplot does the counting for us. So, instead, we need to do two things:

• create a table with all genres and their frequency, and

• use this table to plot the genres by the frequency we computed

# Step 1: The frequency table only
imdb_top_250 %>%
count(genre_01)
#> # A tibble: 11 × 2
#>    genre_01      n
#>    <fct>     <int>
#>  1 Action       40
#>  2 Adventure    20
#>  3 Animation    24
#>  4 Biography    22
#>  5 Comedy       23
#>  6 Crime        38
#>  7 Drama        72
#>  8 Film-Noir     1
#>  9 Horror        3
#> 10 Mystery       4
#> 11 Western       3
# Step 2: Plotting a barplot based on the frequency table
imdb_top_250 %>%
count(genre_01) %>%
ggplot(aes(x = genre_01, y = n)) +

# Use geom_col() instead of geom_bar()
geom_col() +

# Add titles for plot
ggtitle("Most popular movie genres") +
xlab("movie genre") +
ylab("frequency") +

# Rotate plot by 180 degrees
coord_flip()

#Step 3: reorder() genre_01 by frequency, i.e. by 'n'
imdb_top_250 %>%
count(genre_01) %>%
ggplot(aes(x = reorder(genre_01, n), y = n)) +  # Use 'reorder()'
geom_col() +
ggtitle("Most popular movie genres") +
xlab("movie genre") +
ylab("frequency") +
coord_flip()

Step 3 is the only code you need to create the desired plot. The other two steps only demonstrate how one can slowly build this plot, step-by-step. You might have noticed that I used dplyr to chain all these functions together (i.e. %>%), and therefore, it was not necessary to specify the dataset in ggplot().

There are also two new functions we had to use: geom_col() and reorder(). The function geom_col() performs the same step as geom_bar() which can be confusing. The easiest way to remember how to use them is: If you use a frequency table to create your barplot, use geom_col(), if not, use geom_bar(). The function geom_col() requires that we specify an a-axis and a y-axis (our frequency scores), while geom_bar() works with one variable.

In many cases, when creating plots, you have to perform two steps:

• generate the statistics you want to plot, e.g. a frequency table, and

• plot the data via ggplot()

Now you have learned the fundamentals of plotting in R. We will create a lot more plots throughout the next chapters. They all share the same basic structure, but we will use different geom_s to describe our data. By the end of this book, you will have accrued enough experience in plotting in R that it will feel like second nature. If you want to deepen your knowledge of ggplot, you should take a look at the book ‘ggplot: Elegant Graphics for Data Analysis’ or ‘R Graphics Cookbook’ which moves beyond ggplot2. Apart from that, you can also find fantastic packages which extend the range of ‘geoms’ you can use in the ‘ggplot2 extensions gallery’.

8.2 Frequencies and relative frequencies: Counting categorical variables

One of the most fundamental descriptive statistics includes frequencies, i.e. counting the number of occurrences of a factor level, string or numeric value. For example, we might be interested to know which director produced most movies listed in the IMDb Top 250. Therefore multiple movies might belong to the same value in our factor director. We already used the required function to compute such a frequency when we looked at movie genres (see Chapter 8.1), i.e. count().

imdb_top_250 %>% count(director)
#> # A tibble: 155 × 2
#>    director                  n
#>    <fct>                 <int>
#>  1 Aamir Khan                1
#>  2 Adam Elliot               1
#>  3 Akira Kurosawa            6
#>  4 Alejandro G. Inarritu     1
#>  5 Alfred Hitchcock          6
#>  6 Andrei Tarkovsky          2
#>  7 Andrew Stanton            2
#>  8 Anthony Russo             2
#>  9 Anurag Kashyap            1
#> 10 Asghar Farhadi            1
#> # … with 145 more rows

The result indicates that 155 directors produced 250 movies. Thus, some movies have to be from the same director. As the frequency table shows, Akira Kurosawa directed 6 films, and Alfred Hitchcock also produced 6 movies. To keep the table more manageable, we can filter() our dataset and include only directors who made at least 6 movies because we know there are at least two already.

imdb_top_250 %>%
count(director) %>%
filter(n >= 6)
#> # A tibble: 6 × 2
#>   director              n
#>   <fct>             <int>
#> 1 Akira Kurosawa        6
#> 2 Alfred Hitchcock      6
#> 3 Christopher Nolan     7
#> 4 Martin Scorsese       7
#> 5 Stanley Kubrick       7
#> 6 Steven Spielberg      6

There are in total 6 directors who produced several excellent movies, and if you are a bit of a movie fan, all these names will sound familiar.

Besides absolute frequencies, i.e. the actual count of occurrences of a value, we sometimes wish to compute relative frequencies to make it easier to compare categories more easily. Relative frequencies are more commonly known as percentages which indicate the ratio or proportion of an occurrence relative to the total number of observations. Consider the following example, which reflects a study where participants were asked to rate a new movie after watching it.

glimpse(movie_ratings)
#> Rows: 26
#> Columns: 3
#> $participant <chr> "A", "B", "C", "D", "E", "F", "G", "H", "I", "J", "K", "L"… #>$ gender      <chr> "male", "female", "male", "female", "female", "male", "mal…
#> rating <int> 2, 6, 6, 8, 1, 8, 4, 7, 9, 4, 8, 4, 1, 3, 8, 2, 5, 6, 4, 1… It might be interesting to know whether our movie ratings were mainly from male or female viewers. Thus, we can compute the absolute and relative frequencies at once by creating a new variable with mutate() and the formula to calculate percentages, i.e. n / sum(n). movie_ratings %>% count(gender) %>% # add the relative distributions, i.e. percentages mutate(perc = n / sum(n)) #> # A tibble: 2 × 3 #> gender n perc #> <chr> <int> <dbl> #> 1 female 17 0.654 #> 2 male 9 0.346 It seems we have a very uneven distribution of male and female participants. Thus, our analysis is affected by having more female participants. Consequently, any further computation we perform with this dataset would reflect the opinion of female viewers more than those of male ones. This is important to know because it limits the representativeness of our results. The insights gained from primarily female participants in this study will not be helpful when trying to understand male audiences. Therefore, understanding who the participants are in your study is essential before undertaking any further analysis. Sometimes, it might even imply that we have to change the focus of our study entirely. 8.3 Central tendency measures: Mean, Median, Mode The mean, median and mode (the 3 Ms) are all measures of central tendency, i.e. they provide insights into how our data is distributed. All three of these measures summarise our data/variable by a single score which can be helpful but sometimes also terribly misleading. 8.3.1 Mean The mean is likely the most known descriptive statistics and, at the same time, a very powerful and influential one. For example, the average ratings of restaurants on Google might influence our decision on where to eat out. Similarly, we might consider the average rating of movies to decide which one to watch in the cinema with friends. Thus, what we casually refer to as the ‘average’ is equivalent to the ‘mean’. In R, it is simple to compute the mean using the function mean(). We used this function in Chapter 5.3 and Chapter 7.8 already. However, we have not looked at how we can plot the mean. Assume we are curious to know how successful movies are in each of the genres. The mean could be a good starting point to answer this question because it provides the ‘average’ success of movies in a particular genre. The simplest approach to investigating this is using a bar plot, like in Chapter 8.1. So, we first create a tibble that contains the means of gross_in_m (i.e. the financial success fo a movie) for each genre in genre_01. Then we use this table to plot a bar plot with geom_col(). imdb_top_250 %>% # Group data by genre group_by(genre_01) %>% # Compute the mean for each group (remove NAs via na.rm = TRUE) summarise(mean_earnings_in_m = mean(gross_in_m, na.rm = TRUE)) %>% # Create the plot ggplot(aes(x = reorder(genre_01, mean_earnings_in_m), y = mean_earnings_in_m)) + geom_col() + coord_flip() You will have noticed that we use the function summarise() instead of mutate(). The summarise() function is a special version of mutate(). While mutate() returns a value for each row, summarise condenses our dataset, e.g. turning each row of observations into scores for each genre. Here is an example of a simple dataset which illustrates the difference between these two functions. # Create a simple dataset from scratch with tibble() (data <- tibble(number = c(1, 2, 3, 4, 5), group = factor(c("A", "B", "A", "B", "A")))) #> # A tibble: 5 × 2 #> number group #> <dbl> <fct> #> 1 1 A #> 2 2 B #> 3 3 A #> 4 4 B #> 5 5 A # Return the group value for each observation/row data %>% group_by(group) %>% mutate(sum = sum(number)) #> # A tibble: 5 × 3 #> # Groups: group [2] #> number group sum #> <dbl> <fct> <dbl> #> 1 1 A 9 #> 2 2 B 6 #> 3 3 A 9 #> 4 4 B 6 #> 5 5 A 9 # Returns the group value once for each group data %>% group_by(group) %>% summarise(sum = sum(number)) #> # A tibble: 2 × 2 #> group sum #> <fct> <dbl> #> 1 A 9 #> 2 B 6 Considering the results from our plot, it appears as if Action and Animation are far ahead of the rest. On average, both make around 200 million per movie. Adventure ranks third with only approximately 70 million. We can retrieve the exact earnings by removing the plot from the above code. imdb_top_250 %>% group_by(genre_01) %>% summarise(mean_earnings_in_m = mean(gross_in_m, na.rm = TRUE)) %>% arrange(desc(mean_earnings_in_m)) #> # A tibble: 11 × 2 #> genre_01 mean_earnings_in_m #> <fct> <dbl> #> 1 Action 203. #> 2 Animation 189. #> 3 Adventure 73.9 #> 4 Biography 57.9 #> 5 Drama 52.9 #> 6 Crime 49.6 #> 7 Mystery 48.4 #> 8 Horror 41.6 #> 9 Comedy 33.2 #> 10 Western 8.81 #> 11 Film-Noir 0.45 In the last line, I used a new function called arrange(). It allows us to sort rows in our dataset by a specified variable (i.e. a column). By default, arrange() sorts values in ascending order, putting the top genre last. Therefore, we have to use another function to change the order to descending with desc() to see the top-genre listed first. The function arrange() works similarly to reorder() but is used for sorting variables in data frames and less so for plots. Based on this result, we might believe that Action and Animation movies are the most successful genres. However, we have not taken into account how many movies there are in each genre. Consider the following example: # Assume there are 2 Action movies in the top 250 # both of which earn 203 million 2 * 203 #> [1] 406 # Assume there are 10 Drama movies in the top 25 # each of which earns 53 million 10 * 53 #> [1] 530 Thus, the ‘mean’ alone might not be a good indicator. It can tell us which genre is most successful based on a single movie, but we also should consider how many movies there are in each genre. Let’s add the number of movies (n) in each genre to our table. We can achieve this by using the function n(). Of course, we could also use the function count() first and then summarise() the earnings. There is hardly ever one single way to achieve the same result. This time it is truly a matter of personal taste. imdb_top_250 %>% group_by(genre_01) %>% summarise(mean_earnings_in_m = mean(gross_in_m, na.rm = TRUE), n = n()) %>% arrange(desc(mean_earnings_in_m)) #> # A tibble: 11 × 3 #> genre_01 mean_earnings_in_m n #> <fct> <dbl> <int> #> 1 Action 203. 40 #> 2 Animation 189. 24 #> 3 Adventure 73.9 20 #> 4 Biography 57.9 22 #> 5 Drama 52.9 72 #> 6 Crime 49.6 38 #> 7 Mystery 48.4 4 #> 8 Horror 41.6 3 #> 9 Comedy 33.2 23 #> 10 Western 8.81 3 #> 11 Film-Noir 0.45 1 Our interpretation might slightly change based on these findings. There are considerably more movies in the genre Drama than in Action or Animation. We already plotted the frequency of movies per genre in Chapter 8.1. Accordingly, we would have to think that Drama turns out to be the most successful genre if we consider the number of movies listed in the IMDb top 250. As a final step, we can plot the sum of all earnings per genre as yet another indicator for the ‘most successful genre.’ imdb_top_250 %>% filter(!is.na(gross_in_m)) %>% group_by(genre_01) %>% summarise(sum_gross_in_m = sum(gross_in_m)) %>% ggplot(aes(x = genre_01, y = sum_gross_in_m)) + geom_col() + coord_flip() These results confirm that the Action genre made the most money out of all genres covered by the top 250 IMDb movies. I am sure you are curious to know which action movie contributed the most to this result. We can achieve this easily by drawing on functions we already know. imdb_top_250 %>% select(title, genre_01, gross_in_m) %>% filter(genre_01 == "Action") %>% slice_max(order_by = gross_in_m, n = 5) #> # A tibble: 5 × 3 #> title genre_01 gross_in_m #> <chr> <fct> <dbl> #> 1 Avengers: Endgame Action 858. #> 2 Avengers: Infinity War Action 679. #> 3 The Dark Knight Action 535. #> 4 The Dark Knight Rises Action 448. #> 5 Jurassic Park Action 402. Avengers: Endgame and Avengers: Infinity war rank the highest out of all Action movies. Two incredible movies if you are into Marvel comics. In the last line, I sneaked in another new function from dplyr called slice_max(). This function allows us to pick the top 5 movies in our data. So, if you have many rows in your data frame (remember there are 40 action movies), you might want to be ‘picky’ and report only the top 3, 4 or 5. As you can see, slice_max() requires at least to arguments: order_by which defines the variable your dataset should be sorted by, and n which defines how many rows should be selected, e.g. n = 3 for the top 3 movies or n = 10 for the Top 10 movies. If you want to pick the lowest observations in your dataframe, you can use slice_min(). There are several other ‘slicing’ functions that can be useful and can be found on the corresponding dplyr website. In conclusion, the mean helps understand how each movie, on average, performed across different genres. However, the mean alone provides a somewhat incomplete picture. Thus, we need to always look at means in the context of other information to gain a more comprehensive insight into our data. 8.3.2 Median The ‘median’ is the little, for some, lesser-known and used brother of the ‘mean’. However, it can be a powerful indicator for central tendency because it is not so much affected by outliers. With outliers, I mean observations that lie way beyond or below the average observation in our dataset. Let’s inspect the Action genre more closely and see how each movie in this category performed relative to each other. We first filter() our dataset to only show movies in the genre Action and also remove responses that have no value for gross_in_m using the opposite (i.e. !) of the function is.na(). imdb_top_250 %>% filter(genre_01 == "Action" & !is.na(gross_in_m)) %>% ggplot(aes(x = reorder(title, gross_in_m), y = gross_in_m)) + geom_col() + coord_flip() Avengers: Endgame and Avengers: Infinity War are far ahead of any other movie. We can compute the mean with and without these two movies by adding the titles of the movies as a filter criterion. # Mean earnings for Action genre with Avengers movies imdb_top_250 %>% filter(genre_01 == "Action") %>% summarise(mean = mean(gross_in_m, na.rm = TRUE)) #> # A tibble: 1 × 1 #> mean #> <dbl> #> 1 203. # Mean earnings for Action genre with Avengers movies imdb_top_250 %>% filter(genre_01 == "Action" & title != "Avengers: Endgame" & title != "Avengers: Infinity War") %>% summarise(mean = mean(gross_in_m, na.rm = TRUE)) #> # A tibble: 1 × 1 #> mean #> <dbl> #> 1 170. The result is striking. Without these two movies, the Action genre would have fewer earnings per movie than the Animation genre. However, if we computed the median instead, we would not notice such a massive difference in results. This is because the median sorts a dataset, e.g. by gross_in_m and then picks the value that would cut the data into two equally large halves. It does not matter which value is the highest or lowest in our dataset. What matters is the value that is ranked right in the middle of all values. The median splits your dataset into two equally large datasets. # Median earnings for Action genre with Avengers movies imdb_top_250 %>% filter(genre_01 == "Action") %>% summarise(median = median(gross_in_m, na.rm = TRUE)) #> # A tibble: 1 × 1 #> median #> <dbl> #> 1 180. # Median earnings for Action genre with Avengers movies imdb_top_250 %>% filter(genre_01 == "Action" & title != "Avengers: Endgame" & title != "Avengers: Infinity War") %>% summarise(median = median(gross_in_m, na.rm = TRUE)) #> # A tibble: 1 × 1 #> median #> <dbl> #> 1 163. Both medians are much closer to each other, showing how much better suited the median is in our case. In general, when we report means, it is advisable to report the median as well. If a mean and median differ substantially, it could imply that your data ‘suffers’ from outliers. So we have to detect them and think about whether we should remove them for further analysis (see Chapter 9.5). We can visualise medians using boxplots. Boxplots are a very effective tool to show how your data is distributed in one single data visualisation, and it offers more than just the mean. It also shows the spread of your data (see Chapter 8.4). imdb_top_250 %>% filter(genre_01 == "Action" & !is.na(gross_in_m)) %>% ggplot(aes(gross_in_m)) + geom_boxplot() To interpret this boxplot consider Figure 8.1. Every boxplot consists of a ‘box’ and two whiskers (i.e. the lines leading away from the box). The distribution of data can be assessed by looking at different ranges: • MINIMUM to Q1 represents the bottom 25% of our observations, • Q1 to Q3, also known as the interquartile range (IQR) defines the middle 50% of our observations, and • Q3 to MAXIMUM, contains the top 25% of all our data. Thus, with the help of a boxplot, we can assess whether our data is evenly distributed across these ranges or not. If observations fall outside a certain range (i.e. 1.5 IQR) they are classified as outliers. We cover outliers in great detail in Chapter 9.5. Considering our boxplot, it shows that we have one observation that is an outlier, which is likely Avengers: Endgame, but what happened to the other Avengers movie? Is it not an outlier as well? It seems we need some more information. We can overlay another geom_ on top to visualise where precisely each movie lies on this boxplot. We can represent each movie as a point by using geom_point(). This function requires us to define the values for the x and y-axis. Here it makes sense to set y = 0, which aligns all the dots in the middle of the boxplot. imdb_top_250 %>% filter(genre_01 == "Action" & !is.na(gross_in_m)) %>% ggplot(aes(gross_in_m)) + geom_boxplot() + geom_point(aes(y = 0, col = "red"), show.legend = FALSE) To make the dots stand out more, I changed the colour to "red". By adding the col attributed (color and colour also work), ggplot2 would automatically generate a legend. Since we do not need it, we can specify it directly in the geom_point() function. If you prefer the legend, remove show.legend = FALSE. The two dots on the right are the two Avengers movies. This plot also nicely demonstrates why boxplots are so popular and helpful: They provide so many insights, not only into the central tendency of a variable, but also highlight outliers and, more generally, give a sense of the spread of our data (more about this in Chapter 8.4). The median is an important descriptive and diagnostic statistic and should be included in most empirical quantitative studies. 8.3.3 Mode Finally, the ‘mode’ indicates which value is the most frequently occurring value for a specific variable. For example, we might be interested in knowing which IMDb rating was most frequently awarded to the top 250 movies. When trying to compute the mode in R, we quickly run into a problem because there is no function available to do this straight away unless you search for a package that does it for you. However, before you start searching, let’s reflect on what the mode does and why we can find the mode without additional packages or functions. The mode is based on the frequency of the occurrence of a value. Thus, the most frequently occurring value would be the one that is listed at the top of a frequency table. We have already created several frequency tables in this book, and we can create another one to find the answer to our question. imdb_top_250 %>% count(imdb_rating) #> # A tibble: 12 × 2 #> imdb_rating n #> <dbl> <int> #> 1 8.1 80 #> 2 8.2 45 #> 3 8.3 42 #> 4 8.4 29 #> 5 8.5 22 #> 6 8.6 14 #> 7 8.7 5 #> 8 8.8 5 #> 9 8.9 3 #> 10 9 3 #> 11 9.2 1 #> 12 9.3 1 We can also easily visualise this frequency table in the same way as before. To make the plot a bit more ‘fancy,’ we can add labels to the bar which reflect the frequency of the rating. We need to add the attribute label and also add a geom_text() layer to display them. Because the numbers would overlap with the bars, I ‘nudge’ the labels up by 4 units on the y-axis. Finally, because we treat imdb_rating as categories, we should visualise them as_factor()s. imdb_top_250 %>% count(imdb_rating) %>% ggplot(aes(x = as_factor(imdb_rating), y = n, label = n)) + geom_col() + geom_text(nudge_y = 4) The frequency table and the plot reveal that the mode for imdb_rating is 8.1. In addition, we also get to know how often this rating was applied, i.e. 80 times. This provides much more information than receiving a single score and helps better interpret the importance of the mode as an indicator for a central tendency. Consequently, there is generally no need to compute the mode if you can have a frequency table instead. Still, if you are keen to have a function that computes the mode, you will have to write your own function, e.g. as shown in this post on stackeroverflow.com or search for a package that coded one already. As a final remark, it is also possible that you can find two or more modes in your data. For example, if the rating 8.1 appears 80 times and the rating 9.0 appears 80 times, both would be considered a mode. 8.4 Indicators and visualisations to examine the spread of data Understanding how your data is spread out is essential to get a better sense of what your data is composed of. We already touched upon the notion of spread in Chapter 8.3.2 through plotting a boxplot. Furthermore, the spread of data provides insights into how homogeneous or heterogeneous our participants’ responses are. The following will cover some essential techniques to investigate the spread of your data and investigate whether our variables are normally distributed, which is often a vital assumption for specific analytical methods (see Chapter 9. In addition, we will aim to identify outliers that could be detrimental to subsequent analysis and significantly affect our modelling and testing in later stages. 8.4.1 Boxplot: So much information in just one box The boxplot is a staple in visualising descriptive statistics. It offers so much information in just a single plot that it might not take much to convince you that it has become a very popular way to show the spread of data. For example, we might be interested to know how long most movies run. Our gut feeling might tell us that most movies are probably around two hours long. One approach to finding out is a boxplot, which we used before. # Text for annotations longest_movie <- imdb_top_250 %>% filter(runtime_min == max(runtime_min)) %>% select(title) shortest_movie <- imdb_top_250 %>% filter(runtime_min == min(runtime_min)) %>% select(title) # Create the plot imdb_top_250 %>% ggplot(aes(runtime_min)) + geom_boxplot() + annotate("text", label = glue::glue("{longest_movie} ({max(imdb_top_250runtime_min)} min)"),
x = 310,
y = 0.05,
size = 2.5) +
annotate("text",
label = glue::glue("{shortest_movie}
sd_ref <- sd(imdb_top_250runtime_min) # Create a plot with our reference normal distribution n_plot <- imdb_top_250 %>% ggplot(aes(runtime_min)) + geom_function(fun = dnorm, n = 103, args = list(mean = mean_ref, sd = sd_ref), col = "red") # Add our density plot n_plot + geom_density() We can also define how big the bins are for density plots, which make the plot more or less smooth. After all, the density plot is a histogram, but the transitions from one bin to the next are ‘smoothed.’ Here is an example of how different bw settings affect the plot. # bw = 18 n_plot + geom_density(bw = 18) + ggtitle("bw = 18") # bw = 3 n_plot + geom_density(bw = 3) + ggtitle("bw = 18") The benefits of the density plot in this situation are obvious: It is much easier to see whether our data is normally distributed or not when compared to a reference plot. However, we still might struggle to determine normality just by these plots because it depends on how high or low we set bw. 8.4.4 Violin plot: Your smooth boxplot If a density plot is the sibling of a histogram, the violin plot would be the sibling of a boxplot, but the twin of a density plot. Confused? If so, then let’s use the function geom_volin() to create one. imdb_top_250 %>% ggplot(aes(x = runtime_min, y = 0)) + geom_violin() Looking at our plot, it becomes evident where the violin plot got its name from, i.e. its shape. The reason why it is also a twin of the density plot becomes clear when we only plot half of the violin with geom_violinghalf() from the see package. imdb_top_250 %>% ggplot(aes(x = 0, y = runtime_min)) + see::geom_violinhalf() + coord_flip() It looks exactly like the density plot we plotted earlier (see Figure 8.4). The interpretation largely remains the same to a density plot as well. The relationship between the boxplot and the violin plot lies in the symmetry of the violin plot. At this point, it is fair to say that we enter ‘fashion’ territory. It is really up to your taste which visualisation you prefer because they are largely similar but offer nuances that some data sets might require. Each visualisation, though, comes with caveats, which results in the emergence of new plot types. For example, ‘sina’ plots which address the following problem: A boxplot by itself will never be able to show bimodal distributions like a density plot. On the other hand, a density plot can show observations that do not exist, because they are smoothed. The package ggforce enables us to draw a ‘sina’ plot which combines a violin plot with a dot plot. Here is an example of overlaying a sina plot (black dots) and a violin plot (faded blue violin plot). imdb_top_250 %>% ggplot(aes(y = runtime_min, x = 0)) + geom_violin(alpha = 0.5, col = "#395F80", fill = "#C0E2FF") + ggforce::geom_sina() + coord_flip() Lastly, I cannot finish this chapter without sharing with you one of the most popular uses of half-violin plots: The rain cloud plot. It combines a dot plot with a density plot, and each dot represents a movie in our dataset. This creates the appearance of a cloud with raindrops. There are several packages available that can make such a plot. Here I used the see package. imdb_top_250 %>% filter(genre_01 == "Action" | genre_01 == "Drama") %>% ggplot(aes(x = genre_01, y = imdb_rating, fill = genre_01)) + see::geom_violindot(fill_dots = "blue", size_dots = 0.2) + see::theme_modern() + coord_flip() 8.4.5 QQ plot: A ‘cute’ plot to check for normality in your data The QQ plot is an alternative to comparing distributions to a normality curve. Instead of a curve, we plot a line that represents our data’s quantiles against the quantiles of a normal distribution. The term ‘quantile’ can be somewhat confusing, especially after learning about the boxplot, which shows quartiles. However, there is a relationship between these terms. Consider the following comparison: • $$1^{st}$$ Quartile = $$25^{th}$$ percentile = 0.25 quantile • $$2^{nd}$$ Quartile = $$50^{th}$$ percentile = 0.50 quantile = median • $$3^{rd}$$ Quartile = $$75^{th}$$ percentile = 0.75 quantile With these definitions out of the way, let’s plot some quantiles against each other. imdb_top_250 %>% ggplot(aes(sample = runtime_min)) + geom_qq() + geom_qq_line(col = "red") + annotate("text", label = "The 5h-long movie", x = 2.5, y = 308, size = 3) The function geom_qq() creates the dots, while geom_qq_line establishes a reference for a normal distribution. The reference line is drawn in such a way that it touches the quartiles of our distribution. Ideally, we would want that all dotes are firmly aligned with each other. Unfortunately, this is not the case in our dataset. At the top and the bottom, we have points that deviate quite far from a normal distribution. Remember the five-hour-long movie? It is very far away from the rest of the other movies in our dataset. 8.4.6 Standard deviation: Your average deviation from the mean I left the most commonly reported statistics for the spread of data last. The main reason for this is that one might quickly jump ahead to look at the standard deviation without ever considering plotting the distribution of variables in the first place. Similar to the mean and other numeric indicators, they could potentially convey the wrong impression. Nevertheless, the standard deviation is an important measure. To understand what the standard deviation is, we can consider the following visualisation: runtime_mean <- mean(imdb_top_250runtime_min)

imdb_top_250 %>%
select(title, runtime_min) %>%
ggplot(aes(x = title, y = runtime_min)) +
geom_point() +
geom_hline(aes(yintercept = runtime_mean, col = "red"), show.legend = FALSE) +

# Making the plot a bit more pretty
theme(axis.text.x = element_blank(),         # Removes movie titles
panel.grid.major = element_blank(),    # Removes grid lines
panel.background = element_blank()     # Turns background white
) +
ylab("runtime") +
xlab("movies")

The red line (created with geom_hline() represents the mean runtime for all movies in the dataset, which is 129 minutes. We notice that the points are falling above and below the mean, but not directly on it. In other words, there are not many movies that are about 129 minutes long. We make this visualisation even more meaningful if we sorted the movies by their runtime. We can also change the shape of the dots (see also Chapter 10) by using the attribute shape. This helps to plot many dots without having them overlap.

imdb_top_250 %>%
select(title, runtime_min) %>%
ggplot(aes(x = reorder(title, runtime_min), y = runtime_min)) +
geom_point(shape = 124) +
geom_hline(aes(yintercept = runtime_mean, col = "red"), show.legend = FALSE) +

theme(axis.text.x = element_blank(),
panel.grid.major = element_blank(),
panel.background = element_blank()
) +
ylab("runtime") +
xlab("movies")

As we can see, only a tiny fraction of movies are close to the mean. If we now consider the distance of each observation from the red line, we know how much each of them, i.e. each movie, deviates from the mean. The standard deviation tells us how much the runtime deviates on average. To be more specific, to compute the standard deviation by hand, you would:

• compute the difference between each observed value of runtime_min and the mean of runtime_min in your dataset, which is also called ‘deviance’, i.e. $$deviance = runtime\_min - mean_{all\ movies}$$

• square the deviance to turn all scores into positive ones, i.e. $$deviance_{squared} = (deviance)^2$$,

• then we take the sum of all deviations (also known as ‘sum of squared errors’) and divide it by the number of movies minus 1, which results in the ‘variance’, i.e. $$variance = \frac{\sum(deviations_{squared})}{250-1}$$. The variance reflects the average dispersion of our data.

• Lastly, we take the square root of this score to obtain the standard deviation, i.e. $$sd = \sqrt{variance}$$.

While the deviation and variance are interesting to look at, the standard deviation has the advantage that it provides us with the average deviation (also called ‘error’) based on the units of measurement of our variable. Thus, it is much easier to interpret its size.

We could compute this by hand if we wanted, but it is much simpler to use the function sd() to achieve the same.

sd(imdb_top_250$runtime_min) #> [1] 32.63701 The result shows that movies tend to be about 32 minutes longer or shorter than the average movie. This seems quite long. However, we must be aware that this score is also influenced by the outliers we detected before. As such, if standard deviations in your data appear quite large, it can be due to outliers, and you should investigate further. Plotting your data will undoubtedly help to diagnose any outliers. 8.5 Packages to compute descriptive statistics There is no one right way of how you can approach the computation of descriptive statistics. There are only differences concerning convenience and whether you have intentions to use the output from descriptive statistics to plot them or use them in other ways. Often, we only want to take a quick look at our data to understand it better. If this is the case, I would like to introduce you to two packages that are essential in computing descriptive statistics and constitute an excellent starting point to understanding your data: • psych • skimr (see also Chapter 7.2) 8.5.1 The psych package for descriptive statistics As its name indicates, the psych package is strongly influenced by how research is conducted in the field of Psychology. The package is useful in many respects, and we already used it in Chapter 7.8 to compute Cronbach’s $$\alpha$$. Another useful function is describe(). We can use this function to compute summary statistics for a variable. For example, we might wish to inspect the descriptive statistics for runtime_min. psych::describe(imdb_top_250$runtime_min)
#>    vars   n   mean    sd median trimmed   mad min max range skew kurtosis   se
#> X1    1 250 129.37 32.64    126  126.44 28.17  45 321   276 1.36     4.66 2.06

If we want to see descriptive statistics per group, we use describeBy(), which takes a factor as a second argument. So, for example, we could compute the descriptive statistics for runtime_min separately for each genre_01.

descriptives <- psych::describeBy(imdb_top_250$runtime_min, imdb_top_250$genre_01)

# The output for the first three genres
descriptives[1:3]
#> $Action #> vars n mean sd median trimmed mad min max range skew kurtosis se #> X1 1 40 141.98 42.4 136.5 138.75 24.46 45 321 276 1.6 6.21 6.7 #> #>$Adventure
#>    vars  n   mean    sd median trimmed   mad min max range skew kurtosis   se
#> X1    1 20 141.85 39.09    142  138.56 39.29  89 228   139 0.46    -0.62 8.74
#>
#> \$Animation
#>    vars  n   mean    sd median trimmed  mad min max range skew kurtosis se
#> X1    1 24 102.96 14.67     99     102 12.6  81 134    53 0.57    -0.85  3

The advantage of using psych is the convenience of retrieving several descriptive statistics with just one function instead of chaining together several functions to achieve the same.

8.5.2 The skimr package for descriptive statistics

While the psych package returns descriptive statistics for a single numeric variable, skimr takes this idea further and allows us to generate descriptive statistics for all variables of all types in a data frame with just one function, i.e. skim(). We already covered this package in Chapter 7.2, but here is a brief reminder of its use for descriptive statistics.

skimr::skim(imdb_top_250)

In addition to providing descriptive statistics, skim() sorts the variables by data type and provides different descriptive statistics meaningful to each kind. Apart from that, the column n_missing can help spot missing data. Lastly, we also find a histogram in the last column for numeric data, which I find particularly useful.

When just starting to work on a new dataset, the psych and the skimr package are solid starting points to get an overview of the main characteristics of your data, especially in larger datasets. On your R journey, you will encounter many other packages which provide useful functions like these.