• Preface
  • I Background
  • 1 Motivation and objectives
    • 1.1 Motivation
    • 1.2 Objectives
  • 2 R statistical program
    • 2.1 R
    • 2.2 Functions & packages
      • 2.2.1 Function:
      • 2.2.2 Arguments:
      • 2.2.3 Package:
      • 2.2.4 Function & package documentation:
  • 3 GitHub
    • 3.1 DWQ GitHub organization
    • 3.2 DWQ R packages
  • 4 IR process outline
  • II Demonstration
  • 5 Packages & data downloads
    • 5.1 Install & import DWQ’s R packages
    • 5.2 Download and import data
      • 5.2.1 Data download
      • 5.2.2 Data imports
  • 6 Site validation
    • 6.1 Auto site validation
    • 6.2 Manual site validation
  • 7 Data processing
    • 7.1 Data validation
      • 7.1.1 Update detection condition / limit name tables
      • 7.1.2 Determine detection conditions and fill NDs
      • 7.1.3 Update lab/activity & media tables
      • 7.1.4 Apply screening tables
      • 7.1.5 Subset data to desired flag types
    • 7.2 Data prep
      • 7.2.1 Update parameter translation tables
      • 7.2.2 Apply parameter translation table
      • 7.2.3 Subset data to ACCEPT parameters
      • 7.2.4 Criteria & unit assigments
      • 7.2.5 Final data prep step
  • 8 Assessments
    • 8.1 Conventionals (rivers & streams, non-ALU lake surface)
      • 8.1.1 Count exceedances
      • 8.1.2 Assess exceedances
    • 8.2 Toxics
      • 8.2.1 Count exceedances
      • 8.2.2 Assess exceedances
    • 8.3 Lake profiles
    • 8.4 E.coli (not run)
    • 8.5 HFDO (not run)
    • 8.6 Group assessments
  • 9 Rollup
  • 10 Write out assessments
  • 11 Assessment map
  • III Applications
  • 12 Assessment review applications
    • 12.1 Assessment unit & site assessment review dashboard
    • 12.2 Toxic & conventionals assessment review dashboard
    • 12.3 Lake profile dashboard
    • 12.4 High frequency DO dashboard
    • 12.5 Utah Lake Data Explorer
    • 12.6 Ecoli dashboard

DWQ’s irTools package: An automated approach to water quality assessment

11 Assessment map

https://bookdown.org/jakevl/assessment-map/assessment-map.html assessment-map