6 Deciphering Common R Errors
This chapter will be updated with GIFs as common errors are reported to me throughout the 2016-2017 academic year. For references on errors and some solutions in the meantime, check out the following two links by Noam Ross here and David Smith here.
Error: could not find function
This error usually occurs when a package has not been loaded into R via
library. R does not know where to find the specified function. It’s a good habit to use the
library functions on all of the packages you will be using in the top R chunk in your R Markdown file, which is usually given the chunk name
Error: object not found
This error usually refers to your R Markdown document having a chunk that refers to an object that has not been defined in an R chunk at or before that chunk. You’ll frequently see this when you’ve forgotten to copy code from your R Console sandbox back into a chunk in R Markdown.
One of the most frustrating errors you can do in R is by misspelling the name of an object or function. R is not forgiving on this and it won’t try to automatically figure out what you are referring to. You’ll usually be able to quite easily figure out that you made a typo because you’ll receive an
object not found error.
Remember that R is also case-sensitive so if you called an object
Name and then try to call it
name later on without
name being defined, you’ll receive an error.
6.4 Unmatched parenthesis
Another common error is forgetting/neglecting to finish a call to a function with a closing
). An example of this follows:
mean(x = c(1, 5, 10, 52)
Error in parse(text = x, srcfile = src) : <text>:2:0: unexpected end of input 1: mean(x = c(1, 5, 10, 52) ^ Calls: <Anonymous> ... evaluate -> parse_all -> parse_all.character -> parse Execution halted Exited with status 1.
There needs to be one more parenthesis added at the end of your call to
6.5 General guidelines
Don’t be intimidated by R errors. Oftentimes, you will find that you are able to understand what they mean by carefully reading over them. When you can’t, carefully look over your R Markdown file again. You might also want to clear out all of your R environment and start at the top by running the chunks. Remember to only include what you deem your reader will need to follow your analysis.
Even people that have worked with R and programmed for years still use Google and support websites like Stack Overflow asking for help with their R errors or when they aren’t sure how to do something in R. I think you’ll be pleasantly surprised at just how much support is out there.