Orchestrating Spatial Omics Data
1
Preface
1.1
Software information and conventions
2
Introduction
3
Spatially-resolved transcriptomics
3.1
Preprocessing Steps
3.2
Image segmetation
3.3
Loupe Browser
3.4
Space Ranger
4
Spatially-resolved transcriptomics
4.1
Preprocessing Steps
4.2
Image segmetation
4.3
Loupe Browser
4.4
Space Ranger
5
Applications
5.1
Example one
5.2
Example two
6
Final Words
References
Published with bookdown
Orchestrating Spatially-Resolved MultiOmics Analysis with Bioconductor
Chapter 3
Spatially-resolved transcriptomics
We describe our methods in this chapter.
Math can be added in body using usual syntax like this
3.1
Preprocessing Steps
3.2
Image segmetation
3.3
Loupe Browser
3.4
Space Ranger