Preface

This book is a collection of following contents:

  • Quality control for CTCF ChIP-seq profiles in human hepatocyte, myocyte and B cells
  • Definition and validation of lineage-stable and lineage-specific CTCF binding sites (CBS)
  • Reciprocal enrichment between CBSs and enhancers/TE/SE
  • Chromatin state dynamics across cells per CBS sets
  • Genes associated with lineage-specific CBSs: GO enrichment and expression dynamics
  • TAD boundaries and loops identification
  • Group loops based on epigenetic features of both anchors
  • APA for loops using coolpup