Function of CTCF during Lineage Specification
2021-07-13
Preface
This book is a collection of following contents:
- Quality control for CTCF ChIP-seq profiles in human hepatocyte, myocyte and B cells
- Definition and validation of lineage-stable and lineage-specific CTCF binding sites (CBS)
- Reciprocal enrichment between CBSs and enhancers/TE/SE
- Chromatin state dynamics across cells per CBS sets
- Genes associated with lineage-specific CBSs: GO enrichment and expression dynamics
- TAD boundaries and loops identification
- Group loops based on epigenetic features of both anchors
- APA for loops using coolpup