MAY 2020

4 MAY 2020

  • Installed FreeSurfer v7.0.0

BRAINSCOPE

  • Started FreeSurfer v7.0.0

5 MAY 2020

  • Picked up HD from Colorow
  • Put together the new OWC Thunderbay 4
  • Verifying new drive

SOBIK

  • Need to analyzed dataset with FreeSurfer v6.0

LAB MEETING

  • NNL all day meeting tomorrow, Wednesday, May 6

6 MAY 2020

  • Spent the day transferring uinta to new HDs

7 MAY 2020

  • Still transferring data
  • Completed University of Utah HIPAA: Protecting, Accessing, and Releasing Information
  • Completed University of Utah HIPAA Security: Data Protection in Health Care
  • Completed University of Utah Firearms at the University of Utah
  • Completed University of Utah Sexual Harassment Awareness - Health (but it’s not showing completion)
  • Completed VA Privacy and Information Security Awareness and Rules of Behavior
  • Completed VA Privacy and HIPAA Training

8 MAY 2020

  • Drives are installed. Started first backup of data

SOBIK

  • Unzipped SOBIK data
  • Converted T1 to NIFTI
  • Converted second acquisition T1 to NIFTI
  • Converted T2 to NIFTI
  • ACPC aligned both T1 images
  • Uploaded BIDS and data directories to BYU FSL

LIMBIC

  • Started downloading of site 01 raw DICOMs

11 MAY 2020

SOBIK

  • Completed FreeSurfer recon-all

LIMBIC

  • Unzipped site 01 raw DICOM files

12 MAY 2020

SOBIK

  • Generated screenshot of tissue segmentations
  • Generated screenshot of aseg
  • Completed FreeSurfer amygdala and hippocampus segmentations
  • Started FreeSurfer brainstem segmentations

LIMBIC

  • Site 01C
    • Converted T1 to NIFTI
    • Converted T2 to NIFTI
    • Converted T2* to NIFTI
    • Converted FLAIR to NIFTI
    • Converted the 7 runs of B0 to NIFTI
    • Converted DWI to NIFTI
    • Converted rsfMRI to NIFTI
    • Completed ACPC alignment
    • Started upload to BYU FSL

13 MAY 2020

SOBIK

  • Downloaded results
  • Generated tables
  • Complied screenshots

LIMBIC

  • Started download of Site 02C

14 MAY 2020

LIMBIC

  • Site 02C
    • Unzipped DICOM files
    • Converted T1 to NIFTI
    • Converted T2 to NIFTI
    • Converted FLAIR to NIFTI
    • Converted the 2 runs of B0 to NIFTI
    • Converted the 2 runs of DWI to NIFTI
    • Converted rsfMRI to NIFTI
    • Completed ACPC alignment
    • Uploaded to Sylvester

15 MAY 2020

LIMBIC

  • Site 03C
    • Unzipped DICOM files
    • Converted T1 to NIFTI
    • Converted T2 to NIFTI
    • Converted FLAIR to NIFTI

18 MAY 2020

  • Ran ROBEX brain extraction

LIMBIC

  • Site 03C
    • Unzipped DICOM files
    • Converted DWI to NIFTI
    • Converted rsfMRI to NIFTI
    • Completed ACPC alignment
    • Uploaded to Sylvester

19 MAY 2020

LIMBIC

  • Site 04C
    • Unzipped DICOM files
    • Converted T1 to NIFTI
    • Converted T2 to NIFTI
    • Converted FLAIR to NIFTI
    • Converted DWI to NIFTI
    • Converted rsfMRI to NIFTI

LAB MEETING

  • Sign NNL

LAS VEGAS COLLABORATION

20 - 22 MAY 2020

  • Getting bogged down with getting LIMBIC data organized. Figure out a way to create tables and using PyBids, to extract imaging information. Also trying to develop a website with screenshots for all the images to validate. At one point, I caught an error in Site 01C resting state and so started over with those images. This dataset has been very stressful.

28 MAY 2020

LIMBIC

  • Site 05C
    • Unzipped DICOM files
    • Converted T1 to NIFTI
    • Converted T2 to NIFTI
    • Converted FLAIR to NIFTI
    • Converted DWI to NIFTI
    • Uploaded to Sylvester
  • Site 06C
    • Downloading

LIMBIC-CENC Neuroimaging