IN PROGRESS

Need to check out this: https://github.com/pnlbwh/freesurfer-analysis

BRAINSCOPE

  • ENIMGA TBSS with study specific template
  • FreeSurfer v7.1.0
    • recon-all
    • amygdala / hippocampus
    • thalamus
    • brainstem
    • recon-all longitudinal
    • amygdala / hippocampus longitudinal

CENC

  • FreeSurfer v7.1.0
    • amygdala / hippocampus longitudinal
  • Preprocess DWI
    • site 07C
    • site 08C
  • Eddy Quality Control
    • site 01C
    • site 02C
    • site 03C
    • site 04C
    • site 05C
    • site 06C
    • site 07C
    • site 08C
  • VISTASOFT / AFQ
    • site 01C
    • site 02C
    • site 03C
    • site 04C
    • site 05C
    • site 06C
    • site 07C
    • site 08C
  • web.conn-toolbox.org

HDFT

  • FreeSurfer v7.1.0
    • recon-all
    • amygdala / hippocampus
    • thalamus
    • brainstem

KPCA

Click here for current list of participants

  • ENIGMA TBSS with study specific template
  • FreeSurfer v7.1.0
    • recon-all
    • amygdala / hippocampus
    • thalamus
    • brainstem

MAX-IOWA

  • FreeSurfer v7.1.0
    • recon-all
    • amygdala / hippocampus
    • thalamus
    • brainstem

MAX-MEG

Click here for current list of participants

  • ENIGMA TBSS with ENIMGA template
  • ENIGMA TBSS with study specific template
  • Resting state eye closed
  • Gray matter DWI analysis?

MAX-UCSD

  • FreeSurfer v7.1.0
    • recon-all
    • amygdala / hippocampus
    • thalamus
    • brainstem

MIOS

  • Testing the pipelines from Psychiatry Neuroimaging Lab at Brigham and Women’s Hospital and Harvard Medical School (PNLBWH/HMS)

OSA

  • FreeSurfer v7.1.0
    • recon-all
    • amygdala / hippocampus
    • thalamus
    • brainstem

TRACT-TBI

  • Contact Emily when I have access to BYU supercomputer