PREFACE

This notebook contains a general record of my experimental work. If additional information or further clarification is needed, email me at .

Below is a list of projects with complete analyses:

BRAINSCOPE

Data access: https://github.com/njhunsak/BRAINSCOPE

  • T1 Quality Control (FS Euler)
  • FreeSurfer
    • recon-all
    • amygdala
    • hippocampus
    • thalamus
    • brainstem
    • recon-all longitudinal
    • amygdala longitudinal
    • hippocampus longitudinal
  • DWI Quality Control
  • AFQ
  • TBSS with ENIGMA template

CENC

Data access: https://github.com/njhunsak/CENC

  • FreeSurfer
    • recon-all
    • amygdala
    • hippocampus
    • thalamus
    • brainstem
    • recon-all longitudinal
    • amygdala longitudinal
    • hippocampus longitudinal
  • Resting State

HDFT

Data access: https://github.com/njhunsak/HDFT

  • FreeSurfer
    • recon-all
    • brainstem

KPCA

Data access: https://github.com/njhunsak/KPCA

  • T1 Quality Control (FS Euler)
  • FreeSurfer
    • recon-all
    • amygdala
    • hippocampus
    • thalamus
    • brainstem
  • DWI Quality Control
  • AFQ
  • TBSS with ENIGMA template

MAX-IOWA

Data access: https://github.com/njhunsak/MAX-IOWA

  • T1 Quality Control (FS Euler)
  • FreeSurfer
    • recon-all
    • amygdala
    • hippocampus
    • thalamus
    • brainstem
  • AFQ
  • TBSS with ENIGMA template
  • Resting State

MAX-MEG

Data access: https://github.com/njhunsak/MAX-MEG

  • T1 Quality Control (FS Euler)
  • FreeSurfer
    • recon-all
    • amygdala
    • hippocampus
    • thalamus
    • brainstem
  • Resting State

MAX-UCSD

Data access: https://github.com/njhunsak/MAX-UCSD

  • T1 Quality Control (FS Euler)
  • FreeSurfer
    • recon-all
    • amygdala
    • hippocampus
    • thalamus
    • brainstem
  • AFQ
  • TBSS with ENIGMA template
  • Resting State

MIOS

Data access: https://github.com/njhunsak/MIOS

  • T1 Quality Control (FS Euler)
  • FreeSurfer
    • recon-all
    • amygdala
    • hippocampus
    • thalamus
    • brainstem
  • AFQ
  • TBSS with ENIGMA template

OSA

Data access: https://github.com/njhunsak/OSA

  • FreeSurfer
    • recon-all
    • amygdala
    • hippocampus
    • thalamus
    • brainstem
  • TBSS with ENIGMA template
  • Resting State