Chalavi, S., Simmons, A., Dijkstra, H., Barker, G. J., & Reinders, A. A. T. S. (2012). Quantitative and qualitative assessment of structural magnetic resonance imaging data in a two-center study. BMC Med Imaging, 12, 27.

Dale, A., Fischl, B., & Sereno, M. I. (1999). Cortical surface-based analysis: I. Segmentation and surface reconstruction. NeuroImage, 9(2), 179–194.

Desikan, R. S., Ségonne, F., Fischl, B., Quinn, B. T., Dickerson, B. C., Blacker, D., … Killiany, R. J. (2006). An automated labeling system for subdividing the human cerebral cortex on mri scans into gyral based regions of interest. NeuroImage, 31(3), 968–980. 10.1016/j.neuroimage.2006.01.021

Fischl, B., & Dale, A. M. (2000). Measuring the thickness of the human cerebral cortex from magnetic resonance images. Proceedings of the National Academy of Sciences of the United States of America, 97(20), 11050–11055.

Fischl, B., Kouwe, A. van der, Destrieux, C., Halgren, E., Ségonne, F., Salat, D. H., … Dale, A. M. (2004). Automatically Parcellating the Human Cerebral Cortex. Cerebral Cortex, 14(1), 11–22.

Fischl, B., Liu, A., & Dale, A. M. (2001). Automated manifold surgery: Constructing geometrically accurate and topologically correct models of the human cerebral cortex. IEEE Medical Imaging, 20(1), 70–80.

Fischl, B., Salat, D. H., Busa, E., Albert, M., Dieterich, M., Haselgrove, C., … Dale, A. M. (2002). Whole brain segmentation: Automated labeling of neuroanatomical structures in the human brain. Neuron, 33, 341–355.

Fischl, B., Salat, D. H., Kouwe, A. J. W. van der, Makris, N., Ségonne, F., Quinn, B. T., & Dale, A. M. (2004). Sequence-independent segmentation of magnetic resonance images. NeuroImage, 23(Supplement 1), S69–S84. 10.1016/j.neuroimage.2004.07.016

Fischl, B., Sereno, M. I., & Dale, A. (1999a). Cortical surface-based analysis: II: Inflation, flattening, and a surface-based coordinate system. NeuroImage, 9(2), 195–207.

Fischl, B., Sereno, M. I., Tootell, R. B. H., & Dale, A. M. (1999b). High-resolution intersubject averaging and a coordinate system for the cortical surface. Human Brain Mapping, 8(4), 272–284.<272::AID-HBM10>3.0.CO;2-4

Han, X., Jovicich, J., Salat, D., Kouwe, A. van der, Quinn, B., Czanner, S., … Fischl, B. (2006). Reliability of MRI-derived measurements of human cerebral cortical thickness: The effects of field strength, scanner upgrade and manufacturer. NeuroImage, 32(1), 180–194.

Iglesias, J. E., Augustinack, J. C., Nguyen, K., Player, C. M., Player, A., Wright, M., … Alzheimer’s Disease Neuroimaging Initiative. (2015). A computational atlas of the hippocampal formation using ex vivo, ultra-high resolution mri: Application to adaptive segmentation of in vivo mri. Neuroimage, 115, 117–137.

Iglesias, J. E., Insausti, R., Lerma-Usabiaga, G., Bocchetta, M., Van Leemput, K., Greve, D. N., … Paz-Alonso, P. M. (2018). A probabilistic atlas of the human thalamic nuclei combining ex vivo mri and histology. Neuroimage, 183, 314–326.

Iglesias, J. E., Van Leemput, K., Bhatt, P., Casillas, C., Dutt, S., Schuff, N., … Alzheimer’s Disease Neuroimaging Initiative. (2015). Bayesian segmentation of brainstem structures in mri. Neuroimage, 113, 184–195.

Jovicich, J., Czanner, S., Greve, D., Haley, E., Kouwe, A. van der, Gollub, R., … Dale, A. (2006). Reliability in multi-site structural mri studies: Effects of gradient non-linearity correction on phantom and human data. NeuroImage, 30(2), 436–443. 10.1016/j.neuroimage.2005.09.046

Kuperberg, G. R., Broome, M., McGuire, P. K., David, A. S., Eddy, M., Ozawa, F., … Fischl, B. (2003). Regionally localized thinning of the cerebral cortex in Schizophrenia. Archives of General Psychiatry, 60, 878–888.

Reuter, M., & Fischl, B. (2011). Avoiding asymmetry-induced bias in longitudinal image processing. NeuroImage, 57(1), 19–21.

Reuter, M., Rosas, H. D., & Fischl, B. (2010). Highly accurate inverse consistent registration: A robust approach. NeuroImage, 53(4), 1181–1196.

Reuter, M., Schmansky, N. J., Rosas, H. D., & Fischl, B. (2012). Within-subject template estimation for unbiased longitudinal image analysis. NeuroImage, 61(4), 1402–1418.

Rosas, H. D., Liu, A. K., Hersch, S., Glessner, M., Ferrante, R. J., Salat, D. H., … Fischl, B. (2002). Regional and progressive thinning of the cortical ribbon in Huntington’s disease. Neurology, 58(5), 695–701. Retrieved from

Rosen, A. F. G., Roalf, D. R., Ruparel, K., Blake, J., Seelaus, K., Villa, L. P., … Satterthwaite, T. D. (2018). Quantitative assessment of structural image quality. Neuroimage, 169, 407–418.

Salat, D., Buckner, R. L., Snyder, A. Z., Greve, D. N., Desikan, R. S., Busa, E., … Fischl, B. (2004). Thinning of the cerebral cortex in aging. Cerebral Cortex, 14, 721–730.

Saygin, Z. M., Kliemann, D., Iglesias, J. E., Kouwe, A. J. W. van der, Boyd, E., Reuter, M., … Alzheimer’s Disease Neuroimaging Initiative. (2017). High-resolution magnetic resonance imaging reveals nuclei of the human amygdala: Manual segmentation to automatic atlas. Neuroimage, 155, 370–382.

Segonne, F., Dale, A. M., Busa, E., Glessner, M., Salat, D., Hahn, H. K., & Fischl, B. (2004). A hybrid approach to the skull stripping problem in mri. NeuroImage, 22(3), 1060–1075. 10.1016/j.neuroimage.2004.03.032

Segonne, F., Pacheco, J., & Fischl, B. (2007). Geometrically accurate topology-correction of cortical surfaces using nonseparating loops. IEEE Trans Med Imaging, 26, 518–529.

Sled, J. G., Zijdenbos, A. P., & Evans, A. C. (1998). A nonparametric method for automatic correction of intensity nonuniformity in mri data. IEEE Trans Med Imaging, 17, 87–97.

Yeatman, J. D., Dougherty, R. F., Myall, N. J., Wandell, B. A., & Feldman, H. M. (2012). Tract profiles of white matter properties: Automating fiber-tract quantification. PLoS One, 7(11), e49790.