library(lme4, warn.conflicts=F)
## Loading required package: Matrix
library(nlme, warn.conflicts=F)
m_lme4 <- lmer(diameter ~ 1 + (1 | plate) + (1 | sample), data = Penicillin)
m_lme4
## Linear mixed model fit by REML ['lmerMod']
## Formula: diameter ~ 1 + (1 | plate) + (1 | sample)
## Data: Penicillin
## REML criterion at convergence: 330.8606
## Random effects:
## Groups Name Std.Dev.
## plate (Intercept) 0.8467
## sample (Intercept) 1.9316
## Residual 0.5499
## Number of obs: 144, groups: plate, 24; sample, 6
## Fixed Effects:
## (Intercept)
## 22.97
m_nlme <- lme(diameter ~ 1, random = list(plate = ~ 1, sample = ~ 1), data = Penicillin)
m_nlme
## Linear mixed-effects model fit by REML
## Data: Penicillin
## Log-restricted-likelihood: -306.628
## Fixed: diameter ~ 1
## (Intercept)
## 22.97222
##
## Random effects:
## Formula: ~1 | plate
## (Intercept)
## StdDev: 0.3083643
##
## Formula: ~1 | sample %in% plate
## (Intercept) Residual
## StdDev: 1.921869 0.5828833
##
## Number of Observations: 144
## Number of Groups:
## plate sample %in% plate
## 24 144